\directlua{includeCode("text/text")}
\inputCode{text/gender}
\inputCode{text/languages}
\inputCode{text/plain}
\inputCode{text/spelling}

\newcommand\thinkDash[1][]{\directlua{text.thinkDash.setThreshold([[#1]])}}
\newcommand{\thd}[1][]{\directlua{text.thd([[#1]])} }
\newcommand{\elaborate}[1][]{\directlua{text.elaborate([[#1]])}}
\newcommand{\detailed }[2][]{}
\newcommand{\takeFirst}[2]{#1}
\newcommand{\PDFmarkupComment}[4]
{
  % 1 – comment
  % 2 – text
  % 3 – title
  % 4 – colour
  %\pdfmarkupcomment[markup=Highlight,author={#3},color={#4}]{#2}{#1}%
  \pdfmargincomment[icon=Comment,author={#3},color={#4},date={\pdfDay}]{#1}\highLight[#4]{\trim@spaces{#2}}%
}
\newcommand{\PDFblockComment}[4]
{
  % 1 – comment
  % 2 – text
  % 3 – title
  % 4 – colour
  %\pdfmarkupcomment[markup=Highlight,author={#3},color={#4}]{#2}{#1}%
  \pdfmargincomment[icon=Comment,author={#3},color={#4},date={\pdfDay}]{#1}%
  \newline\noindent\textcolor{#4}{\rule{\textwidth}{0.5pt}}\newline\trim@spaces{#2}\newline\noindent\textcolor{#4}{\rule{\textwidth}{0.5pt}}%
}
\newcommand{\@reviewSide}[3]{\pdfmargincomment[icon=Comment,author={#2},color={#3},date={\pdfDay}]{\trim@spaces{#1}}}
\newcommand{\reviewSide }[2][]
{%
  \ifthenelse{\equal{\@Annotations}{true}}%
    {\ifthenelse{\equal{\@AnnotationsSolved|#1}{false|solved}}{}{\@reviewSide{#2}{#1}{\directlua{text.reviewColour([[#1]],[[#2]])}}}}%
    {}%
}

\newcommand{\reviewBlock  }[3][]
{%
  \ifthenelse{\equal{\@Annotations}{true}}%
    {\ifthenelse{\equal{\@AnnotationsSolved|#1}{false|solved}}{#3}{\PDFblockComment{#2}{#3}{#1}{\directlua{text.reviewColour([[#1]],[[#2]])}}}}%
    {#3}%
}

\newcommand{\review     }[3][]
{%
  \ifthenelse{\equal{\@Annotations}{true}}%
    {\ifthenelse{\equal{\@AnnotationsSolved|#1}{false|solved}}{#3}{\PDFmarkupComment{#2}{#3}{#1}{\directlua{text.reviewColour([[#1]],[[#2]])}}}}%
    {#3}%
}

\def\@Annotations{false}
\def\@AnnotationsSolved{true}
\def\disableAnnotations {\def\@Annotations{false}\directlua{text.annotate ( "false" )}}
\def\enableAnnotations  {\def\@Annotations{true}\directlua{text.annotate ( "true"  )}}
\def\hideSolved         {\def\@AnnotationsSolved{false}}
\def\showSolved         {\def\@AnnotationsSolved{true}}

\newcommand{\organism}[2][]{\ifthenelse{\equal{#1}{}}{\textit{#2}}{(#1 \textit{#2})}}